NOIDs causative agents: week 1 (week ending 9 January 2022)
Updated 16 January 2023
NOIDs weekly report
Laboratories in England have a statutory duty to notify the UK Health Security Agency (UKHSA) of the identification of the following causative agents:
- Bacillus anthracis
- Bacillus cereus
- Bordetella pertussis
- Borrelia spp
- Brucella spp
- Burkholderia mallei
- Burkholderia pseudomallei
- Campylobacter spp
- Carbapenemase-producing Gram-negative bacteria
- Chikungunya virus
- Chlamydophila psittaci
- Clostridium botulinum
- Clostridium perfringens
- Clostridium tetani
- Corynebacterium diphtheriae
- Corynebacterium ulcerans
- Coxiella burnetii
- Crimean-Congo haemorrhagic fever virus
- Cryptosporidium spp
- Dengue virus
- Ebola virus
- Entamoeba histolytica
- Escherichia coli O 157
- Francisella tularensis
- Giardia lamblia
- Guanarito virus
- Haemophilus influenzae (invasive)
- Hanta virus
- Hepatitis A
- Hepatitis B
- Hepatitis C
- Hepatitis D
- Hepatitis E
- Influenza virus
- Junin virus
- Kyasanur Forest disease virus
- Lassa virus
- Legionella spp
- Leptospira interrogans
- Listeria monocytogenes
- Machupo virus
- Marburg virus
- Measles virus
- Mumps virus
- Mycobacterium tuberculosis complex
- Neisseria meningitidis
- Omsk haemorrhagic fever virus
- Plasmodium falciparum
- Plasmodium Knowlesi
- Plasmodium Malariae
- Plasmodium Ovale
- Plasmodium Vivax
- Polio virus
- Rabies virus
- Rickettsia spp
- Rift Valley fever virus
- Rubella virus
- Sabia virus
- Salmonella spp
- SARS coronavirus
- Shigella spp
- Streptococcus group A (invasive)
- Streptococcus pneumoniae (invasive)
- Varicella zoster virus
- Variola virus
- Vibrio cholerae
- West Nile Virus
- Yellow fever virus
- Yersinia pestis
Statutory notifications of causative agents grouped by root organism
Totals for the current week compared to the previous 5.
Week notification received | 2021/48 | 2021/49 | 2021/50 | 2021/51 | 2021/52 | 2022/01 |
---|---|---|---|---|---|---|
Arboviruses | ||||||
West nile virus | 1 | - | - | - | - | - |
Bacillus | ||||||
Bacillus cereus | 19 | 17 | 29 | 12 | 15 | 12 |
Bordetella | ||||||
Bordetella pertussis | 2 | - | - | 1 | 2 | 1 |
Borrelia | ||||||
Borrelia burgdorferi | 26 | 15 | 9 | 17 | 3 | 10 |
Borrelia sp | - | 1 | - | - | - | - |
Borrelia tillae | 1 | 2 | - | 3 | - | 1 |
Brucella | ||||||
Brucella melitensis | - | - | - | - | 1 | - |
Campylobacter | ||||||
Campylobacter coli | 19 | 20 | 22 | 21 | 12 | 12 |
Campylobacter curvus | - | - | - | 1 | - | - |
Campylobacter fetus | 1 | - | - | - | - | 1 |
Campylobacter jejuni | 262 | 238 | 217 | 220 | 121 | 111 |
Campylobacter sp | 762 | 708 | 647 | 679 | 442 | 581 |
Campylobacter upsaliensis | 2 | - | - | 2 | - | - |
Chikungunya virus | ||||||
Chikungunya virus | 1 | - | 2 | 1 | - | - |
Clostridium | ||||||
Clostridium perfringens | 23 | 35 | 23 | 19 | 27 | 31 |
Coronavirus | ||||||
Coronavirus | 122 | 130 | 100 | 119 | 66 | 64 |
Human coronavirus 229e | - | 1 | - | 1 | - | - |
Mers coronavirus | - | 2 | - | - | - | - |
SARS coronavirus | 1 | 2 | 1 | - | - | 1 |
SARS-CoV-2 antibody indeterminate | 305 | 172 | 256 | 145 | 123 | 195 |
SARS-CoV-2 antibody void | 62 | 78 | 91 | 84 | 82 | 327 |
SARS-CoV-2 coronavirus (COVID-19) | 279,257 | 304,607 | 505,919 | 695,523 | 977,958 | 966,864 |
SARS-CoV-2 coronavirus (COVID-19) indeterminate | 4,323 | 4,452 | 4,481 | 5,447 | 6,596 | 9,726 |
SARS-CoV-2 coronavirus (COVID-19) negative | 2 | 10 | 1 | 1 | 4 | 3 |
SARS-CoV-2 coronavirus (COVID-19) void | 2 | 1 | - | 2 | 1 | 4 |
SARS-CoV-2 IgG antibody negative | 2,505 | 1,965 | 2,356 | 2,082 | 1,519 | 2,252 |
SARS-CoV-2 IgG antibody positive | 5,030 | 4,285 | 4,784 | 4,267 | 3,299 | 4,906 |
SARS-CoV-2 IgM antibody negative | 44 | 33 | 1 | 1 | 1 | 13 |
SARS-CoV-2 IgM antibody positive | 3 | 2 | - | - | 1 | 2 |
SARS-CoV-2 total antibody negative | 3,442 | 4,047 | 2,911 | 3,697 | 2,454 | 6,149 |
SARS-CoV-2 total antibody positive | 6,526 | 5,967 | 5,819 | 6,176 | 5,084 | 8,648 |
Corynebacterium | ||||||
Corynebacterium diphtheriae | 2 | 1 | 3 | - | 1 | - |
Cryptosporidium | ||||||
Cryptosporidium hominis | 1 | 1 | - | 2 | - | - |
Cryptosporidium parvum | 55 | 26 | 37 | 7 | 6 | 11 |
Cryptosporidium sp | 27 | 21 | 41 | 27 | 12 | 29 |
Entamoeba | ||||||
Entamoeba histolytica | 1 | 1 | 3 | - | - | 5 |
Escherichia | ||||||
Escherichia coli O 157 | 11 | 6 | 2 | 2 | 4 | 6 |
Flaviviruses | ||||||
Dengue virus | 2 | - | 2 | 2 | 1 | - |
Haemophilus | ||||||
Haemophilus influenzae | 45 | 56 | 60 | 43 | 41 | 27 |
Hepatitis viruses | ||||||
Hepatitis A | 9 | 9 | 6 | 9 | 2 | 7 |
Hepatitis B | 186 | 156 | 141 | 157 | 97 | 89 |
Hepatitis C | 235 | 229 | 425 | 374 | 186 | 171 |
Hepatitis D | 2 | 3 | 4 | - | 2 | 2 |
Hepatitis E | 16 | 25 | 19 | 27 | 13 | 15 |
Influenza virus | ||||||
Influenza A | 221 | 258 | 243 | 196 | 166 | 146 |
Influenza B | 85 | 67 | 78 | 31 | 18 | 25 |
Influenza indeterminate | 2 | 6 | - | 4 | - | - |
Influenza ungrouped | 6 | - | 1 | 6 | 2 | 1 |
Legionella | ||||||
Legionella other named | - | - | - | - | 1 | - |
Legionella pneumophila | 5 | 2 | 3 | 5 | - | 3 |
Legionella sp | - | 4 | 1 | 3 | 2 | 2 |
Listeria | ||||||
Listeria monocytogenes | 2 | 5 | 3 | 3 | 4 | 1 |
Mycobacterium | ||||||
Mycobacterium tuberculosis | 67 | 47 | 47 | 49 | 38 | 42 |
Neisseria | ||||||
Neisseria meningitidis | 10 | 6 | 14 | 11 | 9 | 5 |
Paramyxoviruses | ||||||
Measles virus | - | 1 | 1 | - | - | - |
Mumps virus | 2 | - | 3 | 1 | 2 | 2 |
Plasmodium | ||||||
Plasmodium falciparum | 2 | - | 10 | 2 | - | 8 |
Plasmodium ovale | - | - | 2 | - | - | - |
Plasmodium vivax | - | - | 1 | - | - | - |
Polyomavirus | ||||||
Polyomavirus BK | 33 | 20 | 30 | 36 | 20 | 14 |
Polyomavirus JC | 5 | 3 | 2 | 3 | 1 | - |
Rickettsia | ||||||
Rickettsia sp | 1 | - | - | - | - | - |
Rubella virus | ||||||
Rubella virus | 1 | 3 | 3 | 2 | 1 | 2 |
Salmonella | ||||||
Other salmonellas | 43 | 42 | 34 | 43 | 23 | 17 |
Salmonella enteritidis | 25 | 24 | 20 | 15 | - | 6 |
Salmonella infantis | - | - | 5 | 5 | - | - |
Salmonella mbandaka | - | 5 | - | - | - | - |
Salmonella newport | - | 6 | - | - | - | - |
Salmonella sp | 11 | 5 | 5 | 19 | 37 | 63 |
Salmonella typhi and paratyphi | 5 | 5 | - | 6 | - | - |
Salmonella typhimurium | 16 | 22 | 15 | 17 | - | - |
Shigella | ||||||
Shigella dysenteriae | - | - | 1 | - | - | - |
Shigella flexneri | 13 | 10 | 8 | 8 | 3 | 5 |
Shigella sonnei | 14 | 11 | 12 | 12 | 7 | 2 |
Shigella sp | 26 | 12 | 16 | 8 | 21 | 16 |
Streptococcus | ||||||
Streptococcus group A | 25 | 26 | 25 | 28 | 18 | 10 |
Streptococcus pneumoniae | 123 | 123 | 97 | 108 | 124 | 79 |
Carbapenemase-producing Enterobacterales (CPE)[footnote 1]
Please note: the numbers presented here do not include specimens that have been referred to the AMRHAI Reference Unit.
Week notification received | 2021/48 | 2021/49 | 2021/50 | 2021/51 | 2021/52 | 2022/01 |
---|---|---|---|---|---|---|
Citrobacter | ||||||
Citrobacter spp | ||||||
KPC | 1 | - | - | - | 1 | - |
NDM | - | 1 | - | - | 1 | - |
OXA48 | - | 2 | 2 | - | 2 | - |
Enterobacter | ||||||
Enterobacter cloacae complex | ||||||
IMP | - | - | 1 | - | - | - |
KPC | 3 | 2 | 1 | 4 | 1 | - |
OXA48 | 1 | 2 | 1 | 1 | - | - |
Other | - | - | - | - | 1 | - |
Escherichia | ||||||
Escherichia coli | ||||||
IMP | - | 1 | - | - | - | - |
KPC | 1 | 4 | 1 | 1 | 4 | - |
NDM | 3 | - | 4 | 1 | 4 | - |
OXA48 | 6 | 2 | 2 | 5 | - | - |
VIM | 1 | - | - | - | - | - |
Other | - | - | 1 | - | - | - |
Klebsiella | ||||||
Klebsiella aerogenes | ||||||
NDM | - | - | 1 | - | - | - |
Klebsiella oxytoca | ||||||
KPC | - | - | 1 | 1 | 1 | - |
OXA48 | - | - | 1 | - | 1 | - |
Klebsiella pneumoniae | ||||||
KPC | 2 | 5 | 2 | - | 1 | 1 |
NDM | 2 | 5 | 1 | 3 | 5 | - |
OXA48 | 5 | 4 | 1 | 4 | 6 | - |
VIM | - | 1 | - | 1 | - | - |
Other | 1 | - | - | - | 4 | - |
Raoultella | ||||||
Raoultella ornithinolytica | ||||||
OXA48 | - | - | - | - | 1 | - |
Other carbapenemase-producing Gram-negative organisms[footnote 1]
Please note: The numbers presented here do not include specimens that have been referred to the AMRHAI Reference Unit.
Week notification received | 2021/48 | 2021/49 | 2021/50 | 2021/51 | 2021/52 | 2022/01 |
---|---|---|---|---|---|---|
Pseudomonas | ||||||
Pseudomonas aeruginosa | ||||||
IMP | 1 | - | - | - | 2 | - |
NDM | 1 | - | - | - | - | - |
VIM | - | 2 | - | - | 1 | - |
Other | 1 | - | 1 | 2 | 1 | 1 |