NOIDs causative agents: week 41 (week ending 16 October 2022)
Updated 16 January 2023
NOIDs weekly report
Laboratories in England have a statutory duty to notify the UK Health Security Agency (UKHSA) of the identification of the following causative agents:
- Bacillus anthracis
- Bacillus cereus
- Bordetella pertussis
- Borrelia spp
- Brucella spp
- Burkholderia mallei
- Burkholderia pseudomallei
- Campylobacter spp
- Carbapenemase-producing Gram-negative bacteria
- Chikungunya virus
- Chlamydophila psittaci
- Clostridium botulinum
- Clostridium perfringens
- Clostridium tetani
- Corynebacterium diphtheriae
- Corynebacterium ulcerans
- Coxiella burnetii
- Crimean-Congo haemorrhagic fever virus
- Cryptosporidium spp
- Dengue virus
- Ebola virus
- Entamoeba histolytica
- Escherichia coli O 157
- Francisella tularensis
- Giardia lamblia
- Guanarito virus
- Haemophilus influenzae (invasive)
- Hanta virus
- Hepatitis A
- Hepatitis B
- Hepatitis C
- Hepatitis D
- Hepatitis E
- Influenza virus
- Junin virus
- Kyasanur Forest disease virus
- Lassa virus
- Legionella spp
- Leptospira interrogans
- Listeria monocytogenes
- Machupo virus
- Marburg virus
- Measles virus
- Monkeypox virus
- Mumps virus
- Mycobacterium tuberculosis complex
- Neisseria meningitidis
- Omsk haemorrhagic fever virus
- Plasmodium falciparum
- Plasmodium knowlesi
- Plasmodium malariae
- Plasmodium ovale
- Plasmodium vivax
- Polio virus
- Rabies virus
- Rickettsia spp
- Rift Valley fever virus
- Rubella virus
- Sabia virus
- Salmonella spp
- SARS coronavirus
- Shigella spp
- Streptococcus group A (invasive)
- Streptococcus pneumoniae (invasive)
- Varicella zoster virus
- Variola virus
- Vibrio cholerae
- West Nile virus
- Yellow fever virus
- Yersinia pestis
Statutory notifications of causative agents, grouped by root organism
Totals for the current week compared to the previous 5.
Week notification received | 2022/36 | 2022/37 | 2022/38 | 2022/39 | 2022/40 | 2022/41 |
---|---|---|---|---|---|---|
Arboviruses | ||||||
West nile virus | 1 | - | - | 1 | 1 | 1 |
Bacillus | ||||||
Bacillus cereus | 40 | 19 | 19 | 16 | 8 | 12 |
Bordetella | ||||||
Bordetella pertussis | - | - | - | 1 | - | 2 |
Borrelia | ||||||
Borrelia burgdorferi | 38 | 16 | 23 | 22 | 24 | 19 |
Borrelia sp | 4 | 1 | 3 | 1 | - | 2 |
Borrelia tillae | 5 | 1 | 1 | 2 | 1 | 2 |
Brucella | ||||||
Brucella melitensis | - | - | - | - | - | 1 |
Brucella sp | 1 | - | - | 1 | - | - |
Campylobacter | ||||||
Campylobacter coli | 48 | 42 | 21 | 25 | 39 | 38 |
Campylobacter fetus | - | - | - | - | 1 | - |
Campylobacter gracilis | - | - | - | 1 | - | - |
Campylobacter helveticus | 1 | - | - | - | - | - |
Campylobacter jejuni | 284 | 234 | 229 | 266 | 258 | 188 |
Campylobacter other named | 1 | - | 1 | - | - | 2 |
Campylobacter rectus | - | 1 | 1 | - | - | - |
Campylobacter sp | 984 | 876 | 751 | 788 | 1,552 | 845 |
Campylobacter upsaliensis | 2 | 1 | - | - | 1 | 1 |
Campylobacter ureolyticus (bacteroides corrodens) | 1 | - | - | 1 | 1 | - |
Chikungunya virus | ||||||
Chikungunya virus | 1 | 1 | 2 | 1 | - | 2 |
Clostridium | ||||||
Clostridium perfringens | 27 | 22 | 25 | 33 | 30 | 22 |
Coronavirus | ||||||
Coronavirus | 4 | 17 | 9 | 19 | 9 | 13 |
SARS coronavirus | - | - | - | - | - | 1 |
SARS-CoV-2 antibody indeterminate | 98 | 144 | 47 | 111 | 73 | 104 |
SARS-CoV-2 antibody void | 24 | 13 | 9 | 6 | 11 | 32 |
SARS-CoV-2 coronavirus (COVID-19) | 24,993 | 28,809 | 42,253 | 51,747 | 61,578 | 55,315 |
SARS-CoV-2 coronavirus (COVID-19) indeterminate | 380 | 504 | 465 | 508 | 589 | 728 |
SARS-CoV-2 IgG antibody negative | 332 | 461 | 270 | 356 | 366 | 339 |
SARS-CoV-2 IgG antibody positive | 1,516 | 1,703 | 1,647 | 1,185 | 1,223 | 1,786 |
SARS-CoV-2 IgM antibody negative | 2 | 2 | - | - | - | - |
SARS-CoV-2 total antibody negative | 409 | 516 | 442 | 503 | 475 | 557 |
SARS-CoV-2 total antibody positive | 1,608 | 1,538 | 1,753 | 1,516 | 1,486 | 1,672 |
Corynebacterium | ||||||
Corynebacterium diphtheriae | 4 | 4 | 10 | 1 | 3 | - |
Corynebacterium ulcerans | 1 | 3 | 2 | 1 | - | - |
Cryptosporidium | ||||||
Cryptosporidium felis | 1 | - | - | - | - | - |
Cryptosporidium hominis | 86 | 100 | 55 | 69 | 57 | 19 |
Cryptosporidium meleagridis | - | - | 1 | 1 | - | - |
Cryptosporidium parvum | 56 | 74 | 36 | 49 | 44 | 14 |
Cryptosporidium sp | 72 | 69 | 53 | 51 | 79 | 72 |
Entamoeba | ||||||
Entamoeba histolytica | 1 | 2 | 2 | 3 | 2 | 4 |
Escherichia | ||||||
Escherichia coli O 157 | 76 | 28 | 33 | 23 | 15 | 13 |
Flaviviruses | ||||||
Dengue virus | 3 | 7 | 4 | 4 | 2 | 4 |
Giardia | ||||||
Giardia lamblia | - | 1 | 4 | 1 | 3 | 2 |
Haemophilus | ||||||
Haemophilus influenzae | 41 | 37 | 30 | 33 | 45 | 50 |
Hepatitis viruses | ||||||
Hepatitis A | 18 | 17 | 24 | 13 | 18 | 21 |
Hepatitis B | 193 | 176 | 178 | 195 | 168 | 134 |
Hepatitis C | 521 | 379 | 256 | 305 | 273 | 256 |
Hepatitis D | 2 | 7 | 3 | 6 | 4 | 13 |
Hepatitis E | 30 | 36 | 25 | 28 | 34 | 25 |
Influenza virus | ||||||
Influenza A | 238 | 249 | 320 | 447 | 607 | 786 |
Influenza B | 13 | 17 | 24 | 45 | 64 | 140 |
Influenza indeterminate | - | - | - | 1 | 10 | 4 |
Influenza ungrouped | 4 | 6 | 10 | 18 | 16 | 23 |
Legionella | ||||||
Legionella longbeachae | 1 | 1 | - | - | - | - |
Legionella other named | - | 1 | 1 | 2 | - | - |
Legionella pneumophila | 10 | 8 | 14 | 7 | 8 | 7 |
Legionella sp | 1 | - | 1 | 2 | 1 | 7 |
Listeria | ||||||
Listeria monocytogenes | 5 | 4 | 3 | 3 | 4 | 1 |
Mycobacterium | ||||||
Mycobacterium tuberculosis | 74 | 73 | 36 | 58 | 68 | 36 |
Neisseria | ||||||
Neisseria meningitidis | 15 | 13 | 5 | 9 | 11 | 10 |
Orthopoxvirus | ||||||
Monkeypox virus | 62 | 46 | 25 | 25 | 20 | 13 |
Paramyxoviruses | ||||||
Measles virus | 1 | 1 | 2 | 1 | - | 1 |
Mumps virus | 1 | 11 | 2 | 50 | 5 | 1 |
Plasmodium | ||||||
Plasmodium falciparum | 2 | - | 2 | 12 | 9 | 3 |
Plasmodium malariae | - | - | - | 1 | - | - |
Plasmodium ovale | - | 1 | - | 1 | - | - |
Plasmodium vivax | - | - | - | 1 | - | - |
Polyomavirus | ||||||
Polyomavirus BK | 23 | 40 | 46 | 52 | 38 | 55 |
Polyomavirus JC | 3 | 5 | 3 | 8 | 5 | 12 |
Rickettsia | ||||||
Rickettsia spotted fever | - | - | - | 1 | - | - |
Rubella virus | ||||||
Rubella virus | 1 | 3 | 1 | 7 | 2 | 5 |
Salmonella | ||||||
Other salmonellas | 74 | 82 | 67 | 82 | 47 | 29 |
Salmonella agona | 6 | - | - | - | 5 | - |
Salmonella braenderup | 5 | - | - | - | - | - |
Salmonella chester | 6 | - | - | 6 | - | - |
Salmonella coeln | 5 | - | - | - | - | - |
Salmonella enteritidis | 98 | 100 | 81 | 65 | 54 | 28 |
Salmonella infantis | 11 | 5 | 9 | 8 | - | - |
Salmonella java | 6 | - | - | - | - | - |
Salmonella kentucky | 5 | - | 5 | 6 | - | - |
Salmonella newport | - | 6 | 8 | - | 6 | - |
Salmonella oranienburg | - | - | 6 | - | - | - |
Salmonella saint-paul | 7 | - | 9 | - | - | - |
Salmonella sp | 15 | 28 | 28 | 29 | 74 | 141 |
Salmonella thompson | - | - | 5 | - | - | - |
Salmonella typhi and paratyphi | 20 | 32 | 24 | 24 | 10 | 13 |
Salmonella typhimurium | 71 | 48 | 70 | 65 | 43 | 13 |
Salmonella virchow | 8 | 5 | 7 | 7 | - | - |
Slmonella enterica | - | - | - | - | 5 | - |
Shigella | ||||||
Shigella boydii | - | 1 | 1 | 3 | - | - |
Shigella dysenteriae | 1 | - | 1 | 1 | - | - |
Shigella flexneri | 11 | 11 | 10 | 13 | 15 | 7 |
Shigella sonnei | 22 | 24 | 16 | 27 | 16 | 29 |
Shigella sp | 50 | 38 | 50 | 40 | 39 | 45 |
Streptococcus | ||||||
Streptococcus group A | 53 | 37 | 47 | 39 | 57 | 52 |
Streptococcus pneumoniae | 46 | 49 | 55 | 81 | 93 | 93 |
Vibrio | ||||||
Vibrio cholerae | 1 | 1 | 1 | - | 2 | - |
Carbapenemase-producing Enterobacterales (CPE)*
Please note: the numbers presented here do not include specimens that have been referred to the AMRHAI Reference Unit.
Week notification received | 2022/36 | 2022/37 | 2022/38 | 2022/39 | 2022/40 | 2022/41 | |
---|---|---|---|---|---|---|---|
Citrobacter | |||||||
Citrobacter spp | IMP | - | - | - | - | 1 | - |
KPC | - | 1 | 1 | 1 | - | - | |
NDM | 1 | - | - | 1 | 1 | - | |
OXA48 | - | 6 | 1 | - | 2 | - | |
Enterobacter | |||||||
Enterobacter cloacae complex | IMP | 1 | 1 | - | 1 | - | - |
KPC | 5 | 7 | 3 | 4 | 2 | 1 | |
NDM | 3 | - | - | - | 4 | 1 | |
OXA48 | 2 | 2 | 2 | 1 | 1 | - | |
Other | 1 | - | 1 | - | 1 | - | |
Other enterobacter spp | KPC | 1 | - | - | - | 1 | - |
Escherichia | |||||||
Escherichia coli | IMP | - | 1 | - | 2 | - | - |
KPC | 4 | 4 | 1 | 7 | 2 | 5 | |
NDM | 6 | 2 | 11 | 10 | 6 | 1 | |
OXA48 | 6 | 11 | 9 | 13 | 6 | 2 | |
VIM | 1 | - | - | 1 | - | - | |
Other | - | 1 | 1 | 2 | - | - | |
Escherichia hermannii | KPC | - | - | - | - | 1 | - |
NDM | - | - | 1 | - | - | - | |
Klebsiella | |||||||
Klebsiella oxytoca | IMP | - | - | 1 | - | 1 | - |
KPC | 4 | 11 | 3 | 1 | 1 | - | |
OXA48 | - | 1 | 1 | - | - | - | |
Klebsiella pneumoniae | IMP | - | 3 | - | 1 | 1 | - |
KPC | 6 | 4 | 9 | 5 | 7 | 4 | |
NDM | 6 | 4 | 3 | 2 | 1 | - | |
OXA48 | 10 | 2 | 7 | 8 | 8 | 1 | |
VIM | - | - | 1 | - | - | - | |
Other | - | 1 | 1 | 1 | 2 | - | |
Other klebsiella spp | KPC | - | - | - | - | 1 | - |
Leclercia | |||||||
Leclercia adecarboxylata | KPC | - | - | - | - | 1 | - |
Morganella | |||||||
Morganella morganii | NDM | - | - | 1 | - | - | - |
OXA48 | - | 2 | - | - | - | - | |
Pantoea | |||||||
Pantoea spp | OXA48 | 1 | - | - | - | - | - |
Providencia | |||||||
Providencia stuartii | VIM | - | - | 1 | - | - | - |
Raoultella | |||||||
Raoultella planticola (klebsiella planticola) | KPC | - | 1 | - | - | - | - |
Shigella | |||||||
Shigella spp | IMP | 1 | - | - | - | - | - |
Other carbapenemase-producing Gram-negative organisms*
Please note: the numbers presented here do not include specimens that have been referred to the AMRHAI Reference Unit.
Week notification received | 2022/36 | 2022/37 | 2022/38 | 2022/39 | 2022/40 | 2022/41 | |
---|---|---|---|---|---|---|---|
Acinetobacter | |||||||
Acinetobacter baumannii | Other | 1 | - | - | - | - | - |
Pseudomonas | |||||||
Pseudomonas aeruginosa | NDM | - | - | 1 | - | - | - |
VIM | - | 1 | 1 | - | - | 1 | |
Other | 3 | - | 1 | - | 4 | 1 | |
Pseudomonas putida group | VIM | - | - | - | 1 | - | - |
Other pseudomonas spp | Other | - | - | 1 | - | - | - |
*for all Carbapenemase-producing Gram-negative organisms, the reports are de- duplicated by first mention of organism species and resistance mechanism by person in a rolling 52-week period.