NOIDs causative agents: week 20 (week ending 19 May 2024)
Updated 12 August 2024
Applies to England and Wales
Laboratories in England have a statutory duty to notify the UK Health Security Agency of the identification of the following causative agents:
- Bacillus anthracis
- Bacillus cereus
- Bordetella pertussis
- Borrelia spp
- Brucella spp
- Burkholderia mallei
- Burkholderia pseudomallei
- Campylobacter spp
- Carbapenemase-producing Gram-negative bacteria
- Chikungunya virus
- Chlamydophila psittaci
- Clostridium botulinum
- Clostridium perfringens
- Clostridium tetani
- Corynebacterium diphtheriae
- Corynebacterium ulcerans
- Coxiella burnetii
- Crimean-Congo haemorrhagic fever virus
- Cryptosporidium spp
- Dengue virus
- Ebola virus
- Entamoeba histolytica
- Escherichia coli O 157
- Francisella tularensis
- Giardia lamblia
- Guanarito virus
- Haemophilus influenzae (invasive)
- Hanta virus
- Hepatitis A
- Hepatitis B
- Hepatitis C
- Hepatitis D
- Hepatitis E
- Influenza virus
- Junin virus
- Kyasanur Forest disease virus
- Lassa virus
- Legionella spp
- Leptospira interrogans
- Listeria monocytogenes
- Machupo virus
- Marburg virus
- Measles virus
- Mpox virus
- Mumps virus
- Mycobacterium tuberculosis complex
- Neisseria meningitidis
- Omsk haemorrhagic fever virus
- Plasmodium falciparum
- Plasmodium Knowlesi
- Plasmodium Malariae
- Plasmodium Ovale
- Plasmodium Vivax
- Polio virus
- Rabies virus
- Rickettsia spp
- Rift Valley fever virus
- Rubella virus
- Sabia virus
- Salmonella spp
- SARS Coronavirus
- Shigella spp
- Streptococcus group A (invasive)
- Streptococcus pneumoniae (invasive)
- Varicella zoster virus
- Variola virus
- Vibrio cholerae
- West Nile virus
- Yellow fever virus
- Yersinia pestis
Statutory Notifications of causative agents, grouped by root organism
Totals for the current week compared to the previous 5
Week notification received | 2024/15 | 2024/16 | 2024/17 | 2024/18 | 2024/19 | 2024/20 |
---|---|---|---|---|---|---|
Arboviruses | ||||||
West Nile virus | - | - | - | 1 | - | - |
Bacillus | ||||||
Bacillus cereus | 16 | 12 | 23 | 12 | 17 | 25 |
Bordetella | ||||||
Bordetella pertussis | 200 | 223 | 245 | 250 | 153 | 154 |
Borrelia | ||||||
Borrelia burgdorferi | 17 | 8 | 20 | 13 | 13 | 10 |
Borrelia other named | - | - | - | 1 | - | - |
Borrelia sp | 2 | 1 | 3 | 2 | 2 | 2 |
Brucella | ||||||
Brucella melitensis | - | 1 | 1 | - | - | - |
Brucella sp | 1 | 1 | 1 | - | - | - |
Campylobacter | ||||||
Campylobacter coli | 35 | 35 | 49 | 44 | 42 | 34 |
Campylobacter fetus | 2 | - | - | - | - | - |
Campylobacter gracilis | 2 | - | - | - | - | - |
Campylobacter jejuni | 256 | 279 | 261 | 297 | 234 | 316 |
Campylobacter lari | 1 | - | - | 1 | - | 1 |
Campylobacter other named | - | 1 | 1 | - | 2 | 4 |
Campylobacter rectus | - | - | - | 2 | 1 | 1 |
Campylobacter sp | 920 | 966 | 1,010 | 1,058 | 914 | 1,422 |
Campylobacter upsaliensis | - | 2 | - | - | - | - |
Chikungunya virus | ||||||
Chikungunya virus | 2 | 2 | 2 | 2 | 2 | 2 |
Clostridium | ||||||
Clostridium perfringens | 50 | 38 | 34 | 34 | 34 | 27 |
Clostridium tetani | - | 1 | - | - | - | - |
Coronavirus | ||||||
Coronavirus | 91 | 80 | 81 | 75 | 92 | 81 |
Human coronavirus 229e | 1 | 2 | 1 | - | - | - |
Human coronavirus hku1 | - | 2 | - | - | - | 1 |
SARS coronavirus | - | - | 1 | - | - | 1 |
SARS-CoV-2 antibody indeterminate | 107 | 122 | 96 | 131 | 109 | 90 |
SARS-CoV-2 antibody void | - | 5 | - | - | - | - |
SARS-CoV-2 coronavirus (COVID-19) | 1,298 | 1,307 | 1,688 | 2,074 | 2,493 | 2,114 |
SARS-CoV-2 coronavirus (COVID-19) indeterminate | 42 | 27 | 29 | 29 | 48 | 44 |
SARS-CoV-2 IgG antibody negative | 17 | 12 | 26 | 20 | 21 | 17 |
SARS-CoV-2 IgG antibody positive | 119 | 122 | 152 | 155 | 156 | 155 |
SARS-CoV-2 total antibody negative | 25 | 12 | 10 | 4 | 7 | 11 |
SARS-CoV-2 total antibody positive | 73 | 35 | 37 | 38 | 41 | 53 |
Corynebacterium | ||||||
Corynebacterium diphtheriae | 2 | 2 | 1 | - | 2 | 2 |
Corynebacterium ulcerans | - | - | - | 1 | 1 | - |
Cryptosporidium | ||||||
Cryptosporidium cuniculus | 1 | - | - | - | - | - |
Cryptosporidium hominis | 23 | 12 | 12 | 14 | 11 | 8 |
Cryptosporidium meleagridis | - | - | 1 | - | - | - |
Cryptosporidium parvum | 164 | 163 | 171 | 123 | 76 | 31 |
Cryptosporidium sp | 56 | 83 | 95 | 63 | 64 | 147 |
Cryptosporidium ubiquitum | - | 1 | - | - | - | - |
Entamoeba | ||||||
Entamoeba histolytica | 1 | - | 1 | - | 2 | 2 |
Escherichia | ||||||
Escherichia coli O 157 | 5 | 12 | 7 | 7 | 8 | 15 |
Flaviviruses | ||||||
Dengue virus | 7 | 5 | 4 | 9 | - | 13 |
Haemophilus | ||||||
Haemophilus influenzae | 70 | 78 | 71 | 66 | 64 | 69 |
Hepatitis viruses | ||||||
Hepatitis A | 11 | 15 | 11 | 23 | 8 | 27 |
Hepatitis B | 289 | 369 | 373 | 361 | 320 | 314 |
Hepatitis C | 252 | 239 | 251 | 223 | 199 | 250 |
Hepatitis D | 5 | 8 | 7 | 10 | 13 | 6 |
Hepatitis E | 36 | 38 | 30 | 28 | 31 | 24 |
Influenza virus | ||||||
Influenza A | 612 | 365 | 349 | 357 | 281 | 217 |
Influenza B | 292 | 152 | 219 | 229 | 217 | 170 |
Influenza indeterminate | 2 | - | 1 | - | - | 1 |
Influenza ungrouped | 14 | 8 | 3 | 8 | 5 | 6 |
Legionella | ||||||
Legionella longbeachae | - | - | - | 1 | - | - |
Legionella other named | - | - | - | 1 | - | - |
Legionella pneumophila | 11 | 3 | 2 | 2 | 4 | 8 |
Legionella sp | 4 | 3 | 1 | 2 | 4 | 5 |
Leptospira | ||||||
Leptospira interrogans | 1 | - | - | 1 | - | 1 |
Listeria | ||||||
Listeria monocytogenes | 4 | 2 | 5 | 3 | 5 | 1 |
Mycobacterium | ||||||
Mycobacterium tuberculosis | 97 | 93 | 88 | 96 | 87 | 80 |
Neisseria | ||||||
Neisseria meningitidis | 31 | 31 | 29 | 29 | 25 | 29 |
Orthopoxvirus | ||||||
Mpox virus | 10 | 4 | 5 | 2 | 3 | 5 |
Paramyxoviruses | ||||||
Measles virus | 87 | 74 | 61 | 56 | 69 | 74 |
Mumps virus | 17 | 4 | 13 | 7 | 2 | 4 |
Plasmodium | ||||||
Plasmodium falciparum | 7 | 1 | - | - | - | 5 |
Plasmodium malariae | - | 1 | - | - | - | - |
Plasmodium ovale | 1 | - | - | - | - | - |
Plasmodium vivax | 1 | - | - | - | - | 2 |
Polyomavirus | ||||||
Polyomavirus BK | 51 | 58 | 41 | 34 | 46 | 71 |
Polyomavirus JC | 4 | 4 | 4 | 5 | 2 | 13 |
Polyomavirus untyped | 14 | 12 | 20 | 15 | 23 | 16 |
Rickettsia | ||||||
Rickettsia prowazekii | - | 1 | - | - | - | 1 |
Rickettsia spotted fever | - | 1 | - | - | 1 | - |
Rickettsia tsutsugamushi | - | - | - | 1 | - | 1 |
Rubella virus | ||||||
Rubella virus | 3 | 3 | 2 | 1 | 1 | 7 |
Salmonella | ||||||
Other salmonellas | 59 | 70 | 58 | 62 | 37 | 23 |
Salmonella agona | - | - | - | 5 | - | - |
Salmonella bareilly | 5 | - | - | - | - | - |
Salmonella chester | 5 | - | - | - | - | - |
Salmonella enteritidis | 36 | 57 | 55 | 33 | 13 | 9 |
Salmonella java | - | - | 5 | - | - | - |
Salmonella newport | 5 | - | 7 | - | - | - |
Salmonella poona | - | - | - | 5 | - | - |
Salmonella saint-paul | - | 6 | 6 | - | - | - |
Salmonella sp | 33 | 21 | 11 | 35 | 97 | 139 |
Salmonella stanley | - | 9 | 6 | - | - | - |
Salmonella typhi and paratyphi | 13 | 18 | 13 | 20 | 24 | 24 |
Salmonella typhimurium | 28 | 29 | 36 | 29 | 13 | 7 |
Shigella | ||||||
Shigella boydii | 1 | 2 | - | 4 | 1 | 1 |
Shigella dysenteriae | - | - | - | 1 | - | - |
Shigella flexneri | 18 | 25 | 17 | 19 | 14 | 7 |
Shigella sonnei | 15 | 18 | 27 | 16 | 16 | 20 |
Shigella sp | 52 | 50 | 70 | 65 | 61 | 68 |
Streptococcus | ||||||
Streptococcus group A | 80 | 80 | 87 | 73 | 76 | 57 |
Streptococcus pneumoniae | 154 | 127 | 124 | 110 | 127 | 129 |
Vibrio | ||||||
Vibrio cholerae | 3 | - | 1 | 1 | 1 | - |
Carbapenemase-producing Enterobacterales (CPE)
For all Carbapenemase-producing Gram-negative organisms, the reports are de-duplicated by first mention of organism species and resistance mechanism by person in a rolling 52-week period.
Note: the numbers presented here do not include specimens that have been referred to the AMRHAI Reference Unit.
Week notification received | 2024/15 | 2024/16 | 2024/17 | 2024/18 | 2024/19 | 2024/20 | |
---|---|---|---|---|---|---|---|
Citrobacter | |||||||
Citrobacter spp | IMP | 1 | - | 1 | - | - | - |
KPC | 2 | 1 | 1 | 1 | - | 2 | |
NDM | 1 | 2 | 1 | 3 | 2 | 1 | |
OXA48 | 1 | 2 | 1 | 2 | - | 1 | |
VIM | 1 | - | - | - | 2 | - | |
Enterobacter | |||||||
Enterobacter cloacae complex | IMP | 3 | 3 | 2 | 1 | 1 | - |
KPC | 8 | 2 | 3 | 3 | 2 | 1 | |
NDM | 10 | 13 | 2 | 6 | 2 | 3 | |
OXA48 | 4 | 3 | 2 | 4 | 3 | 1 | |
VIM | - | 1 | 1 | - | - | - | |
Other | 3 | 1 | - | 1 | - | - | |
Other enterobacter spp | IMP | 2 | 2 | - | 1 | - | - |
KPC | - | 1 | - | - | - | - | |
NDM | 1 | 6 | 2 | 2 | - | - | |
OXA48 | - | 3 | 1 | - | - | - | |
VIM | - | 1 | - | - | - | 1 | |
Escherichia | |||||||
Escherichia coli | IMP | - | 3 | 1 | 1 | 2 | 1 |
KPC | 4 | 1 | 3 | 2 | 2 | 1 | |
NDM | 35 | 18 | 25 | 25 | 21 | 4 | |
OXA48 | 18 | 21 | 20 | 24 | 20 | 5 | |
Other | 2 | 2 | 1 | 2 | 1 | - | |
Escherichia vulneris | NDM | - | - | - | - | 1 | - |
Klebsiella | |||||||
Klebsiella aerogenes | OXA48 | - | - | - | - | 1 | - |
Other | - | - | - | 1 | - | - | |
Klebsiella oxytoca | IMP | 1 | - | - | - | - | - |
KPC | - | 3 | 1 | 2 | 2 | 2 | |
NDM | - | - | 1 | - | - | - | |
OXA48 | 1 | 2 | 1 | - | 2 | 1 | |
Klebsiella pneumoniae | IMP | - | 2 | 2 | 1 | 1 | - |
KPC | 13 | 11 | 12 | 12 | 16 | 1 | |
NDM | 11 | 9 | 9 | 12 | 21 | 5 | |
OXA48 | 11 | 15 | 8 | 15 | 8 | 1 | |
VIM | 2 | 1 | 1 | - | - | - | |
Other | 2 | 2 | 1 | - | - | 2 | |
Other klebsiella spp | NDM | 1 | - | - | - | - | - |
OXA48 | 1 | - | - | - | - | - | |
Leclercia | |||||||
Leclercia adecarboxylata | KPC | - | - | 1 | - | - | - |
Morganella | |||||||
Morganella morganii | OXA48 | - | 1 | - | - | - | - |
Proteus | |||||||
Proteus mirabilis | NDM | - | - | 1 | - | 1 | - |
OXA48 | - | 1 | - | 1 | - | - | |
Providencia | |||||||
Providencia rettgeri (proteus rettgeri) | NDM | - | - | - | - | 1 | - |
Raoultella | |||||||
Raoultella ornithinolytica | NDM | - | - | 1 | - | - | - |
OXA48 | - | 1 | - | - | - | - | |
Salmonella | |||||||
Salmonella spp | NDM | - | 1 | - | - | - | - |
Serratia | |||||||
Serratia spp | NDM | - | - | - | - | 1 | - |
Other carbapenemase-producing Gram-negative organisms
For all Carbapenemase-producing Gram-negative organisms, the reports are de-duplicated by first mention of organism species and resistance mechanism by person in a rolling 52-week period.
Note: the numbers presented here do not include specimens that have been referred to the AMRHAI Reference Unit.
Week notification received | 2024/15 | 2024/16 | 2024/17 | 2024/18 | 2024/19 | 2024/20 | |
---|---|---|---|---|---|---|---|
Acinetobacter | |||||||
Acinetobacter baumannii | NDM | - | 1 | - | - | 2 | 1 |
Other | - | 1 | - | - | 1 | - | |
Other acinetobacter spp | NDM | - | 1 | - | - | - | - |
Pseudomonas | |||||||
Pseudomonas aeruginosa | NDM | 1 | - | 2 | - | - | - |
VIM | 2 | - | - | - | 1 | - | |
Other | 1 | 2 | 1 | - | 1 | 1 | |
Other pseudomonas spp | Other | - | - | - | - | 1 | - |
Other | |||||||
NDM | - | - | 1 | - | - | - | |
OXA48 | 1 | - | - | - | - | - | |
Other | 1 | - | - | 1 | - | - |