Reports of respiratory infections made to PHE from PHE and NHS laboratories in England and Wales: weeks 36 to 39, 2019
Updated 29 January 2020
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Data are recorded by week of report, but include only specimens taken in the last 8 weeks (recent specimens).
Table 1. Reports of influenza infection made to PHE Colindale, by week of report
| Week | Week 36 | Week 37 | Week 38 | Week 39 | Total |
|---|---|---|---|---|---|
| Week ending | 8/9/2019 | 15/9/2019 | 22/9/2019 | 29/9/2019 | |
| Influenza A | 45 | 37 | 43 | 62 | 187 |
| Isolation | 1 | – | 2 | 2 | 5 |
| DIF * | 1 | – | – | 1 | 2 |
| PCR | 37 | 33 | 37 | 53 | 160 |
| Other † | 6 | 4 | 4 | 6 | 20 |
| Influenza B | 9 | 10 | 7 | 8 | 34 |
| Isolation | – | – | – | – | 0 |
| DIF * | – | – | 1 | – | 1 |
| PCR | 7 | 9 | 5 | 7 | 28 |
| Other † | 2 | 1 | 1 | 1 | 5 |
* DIF = Direct Immunofluorescence.
† Other = “Antibody detection - single high titre” or “Method not specified”.
Table 2. Respiratory viral detections by any method (culture, direct immunofluorescence, PCR, four-fold rise in paired sera, single high serology titre, genomic, electron microscopy, other method, other method unknown), by week of report
| Week | Week 36 | Week 37 | Week 38 | Week 39 | Total |
|---|---|---|---|---|---|
| Week ending | 8/9/2019 | 15/9/2019 | 22/9/2019 | 29/9/2019 | |
| Adenovirus* | 51 | 63 | 62 | 56 | 232 |
| Coronavirus | 6 | 5 | 7 | 10 | 28 |
| Parainfluenza† | 82 | 79 | 114 | 126 | 401 |
| Rhinovirus | 145 | 211 | 364 | 511 | 1231 |
| RSV | 19 | 22 | 28 | 50 | 119 |
* Respiratory samples only.
† Includes parainfluenza types 1, 2, 3, 4 and untyped.
Table 3. Respiratory viral detections by age group: weeks 36 to 39, 2019
| Age group (years) | <1 year | 1-4 years | 5-14 years | 15-44 years | 45-64 years | ≥65 years | Unknown | Total |
|---|---|---|---|---|---|---|---|---|
| Adenovirus * | 30 | 65 | 31 | 63 | 32 | 11 | – | 232 |
| Coronavirus | 2 | 6 | 2 | 9 | 4 | 5 | – | 28 |
| Influenza A | 4 | 10 | 2 | 61 | 47 | 57 | – | 181 |
| Influenza B | 1 | 1 | 6 | 22 | 7 | 4 | – | 41 |
| Parainfluenza † | 62 | 103 | 39 | 50 | 63 | 84 | – | 401 |
| Respiratory syncytial virus | 52 | 31 | 7 | 9 | 5 | 13 | 2 | 119 |
| Rhinovirus | 268 | 262 | 124 | 221 | 158 | 198 | – | 1231 |
* Respiratory samples only.
† Includes parainfluenza types 1, 2, 3, 4 and untyped.
Table 4. Laboratory reports of infections associated with atypical pneumonia, by week of report
| Week | Week 36 | Week 37 | Week 38 | Week 39 | Total |
|---|---|---|---|---|---|
| Week ending | 8/9/2019 | 15/9/2019 | 22/9/2019 | 29/9/2019 | |
| Coxiella burnetii | 3 | 1 | – | – | 4 |
| Respiratory Chlamydia sp.* | 18 | 16 | 10 | 2 | 46 |
| Mycoplasma pneumoniae | 18 | 21 | 17 | 19 | 75 |
* Includes Chlamydia psittaci, Chlamydia pneumoniae, and Chlamydia sp detected from blood, serum, and respiratory specimens.
Legionnaires Disease cases in England and Wales
Read the latest reports on Legionnaires’ Disease data at: Legionnaires’ disease monthly surveillance reports: 2019.
Routine national (UK) influenza reports
Read the UK weekly flu reports (2018 to 2019 season).
This report was published on 7 October 2019.